| Name | Photo | Church | Location | Information |
| Betlémský sbor |  |
Hussite | Lidická 218 | Rožnov, Lidická 1120/218. Services every Sunday from 8 a.m. |
| Husův Dům
(John Huss house) |
 |
Hussite | U Výstaviště10 | Čtyři Dvory, U Výstaviště 509/10, near bus stop U Parku. Services every Sunday from 11 a.m. |
| Husův sbor |  |
Hussite | Palackého square 1 | Palackého square. Services every Sunday from 9 a.m. |
| Kaple Nanebevzetí Panny Marie (Chapel of Assumption of Virgin Mary) |  |
Roman Catholic | Švabinského square | Mladé, neo-Gothic chapel. Services every Tuesday at 5 p.m. |
| Kaple Nejsvětějšího Srdce Ježíšova (Chapel of the Sacred Heart of Jesus) |  |
Roman Catholic | Jirsíkova 5 | School chapel, Biskupské gymnázium |
| Kaple Panny Marie (Chapel of Virgin Mary) |  |
Roman Catholic | Biskupská 4 | Chapel in the episcopal residence dedicated to Virgin Mary. The original painting of Panna Maria Budějovická is kept. |
| Kaple Smrtelných úzkostí Páně |  |
Roman Catholic | Kněžská | Greek Catholic services on Thursday and feast days at 7 p.m. Crossroads of Kanovnická and Kněžská streets. |
| Kaple svaté Karoliny (Chapel of Saint Caroline) |  |
Roman Catholic | Cemetery in Mladé | Mladé, neo-Gothic chapel. |
| Kaple svaté Otýlie (Chapel of Saint Odile) |  |
Roman Catholic | Cemetery of Saint Odile | Neo-Romanesque chapel. Services on Sundays at 9:30 a.m. |
| (Chapel of Saint Gorazd) |  |
Roman Catholic | Puchmajerova 2 | Suché Vrbné, in priestly home since 2004. |
| Kaple svatého Josefa (Chapel of Saint Joseph) |  |
Roman Catholic | Na Sadech 19 | Chapel of monastery congregation of Notre Dame in the House of St. Joseph. Services daily at 6:30 a.m. |
| Kaple Teologické fakulty (Chapel of Theological Faculty) |  |
Roman Catholic | Kněžská 8 | Building of Theological Faculty, 2nd floor. Public usually not allowed. |
| Kaple Všech svatých země České (Chapel of All Saints) |  |
orthodox | Husova třída | Čtyři Dvory, crossroads – Husova and Sukova streets. Services every second Sunday in a month, at 8:30 a.m. |
| Katedrála svatého Mikuláše (Saint Nicholas Cathedral) |  |
Roman Catholic | U Černé věže | In the centre, next to Přemysl Otakar II Square. Reconstructed between 2011 – 2013. |
| Klášterní kostel Obětování Panny Marie (Church of the Sacrifice of Our Lady) |  |
Roman Catholic | Piaristické square | Historical centre, former Dominican convent. |
| Kostel Božského srdce Páně (Church of the Lord´s Heart) |  |
Roman Catholic | Rudolfovská třída | Crossroads of Lipenská and Rudolfovská streets. A part of the monastery of the Congregation of Sisters of the Blessed Sacrament. Services at 7:00 a.m. (Tuesdays, Fridays), at 8:00 a.m. (Sundays), at 6:00 p.m. (Mondays, Wednesdays, Thursdays, Saturdays). |
| Kostel Českobratrské církve evangelické (Church of the Evangelical Church of the Czech Brethren) |  |
Evangelical | 28. října 26 | Built by German Lutherans, until 1934 used by German Evangelics and Evangelical Church of the Czech Brethren. |
| Kostel Panny Marie Královny Andělů (Church of Our Lady of the Queen of Angels) |  |
Roman Catholic | Novohradská | Nové Hodějovice, crossroads of Novohradská and Ke Studánce streets. Services onSundays at 10:30 a.m. |
| Kostel Panny Marie Růžencové (Church of Our Lady of the Rosary) |  |
Roman Catholic | Žižkova třída 4 | Part of the monastery of Congregation of the Brothers of the Blessed Sacrament. Services every day at 9:00 a.m. (Monday at 5:00 p.m., Thursday at 4:00 p.m.) |
| Kostel svatého Cyrila a Metoděje (Church of St. Cyril and Methodius) |  |
Roman Catholic | Puchmajerova 2 | Suché Vrbné, part of the original monastery of Congregation of the Brothers of the Gethseman (until 1950). Services on Fridays at 5 p.m. and Sundays at 8:30 a.m. |
| Kostel svatého Jana Nepomuckého (Church of St. John of Nepomuk) |  |
Roman Catholic | Boženy Němcové | Between the Boženy Němcové, Generála Svobody and Jánská streets. Services at 7:30 a.m. (Wednesdays, Fridays), 9:00 a.m. (Sundays) and at 6:00 p.m. (winter time) or 7:00 (summer time) (Thursdays, Saturdays). |
| Kostel svatého Jana Křtitele a svatého Prokopa (Church of St. John the Baptist and St. Procopius) |  |
Roman Catholic | Staroměstská | Crossroads of Staroměstská and Puklicova streets. The oldest church in České Budějovice existed even before the foundation of the town. Services on Fridays (winter time – 4:30 p.m, summer time – 5:30 p.m.) and Sundays at 8:30 a.m. |
| Kostel Svaté rodiny (Church of the Holy family) |  |
Roman Catholic | Karla IV. | Senovážné náměstí, crossroads of the Karla IV. and Jirsíkova streets. |
| Kostel svatého Václava (Church of St.Wenceslas) |  |
Roman Catholic | Kostelní | Lower part of Kostelní street, next to the Clarion hotel. October – June, first Tuesday in month, services of the word at 6:00 p.m., regular services on Sundays at 11:00 a.m. |
| Kostel svatého Vojtěcha (Chapel of Saint Adalbert) |  |
Roman Catholic | Emy Destinové | Part of the parish of St. Adalbert, salesians |
| Modlitebna Adventistů sedmého dne (Chapel of the Seventh-day Adventists) |  |
Seventh-day Adventist Church | Fráni Šrámka 34 | Building used since 1933. After the revolution, a new one was built, capacity – 200 persons. The front façade is decorated by a painting on glass (by Zenkel) from 1992. |
| Modlitebna Apoštolské církve (Chapel of Apostolic Church) |  |
Apostolic Church | Riegrova 17 | First floor of the apartment building in Riegrova street. |
| Modlitebna Bratrské jednoty baptistů |  |
Baptist | U Hvízdala 9a | Near to the Arpida center, built between 2003 and 2006. |
| Modlitebna Církve bratrské (Chapel of Brethren Church) |  |
Brethren Church | J. Š. Baara 64 | The house with the land was donated by Zícha in 1906. A new (bigger) chapel opened in 2000. |